Pulse Brain · Growing Health Evidence Index
Peer-reviewed

Detecting macroecological patterns in bacterial communities across independent studies of global soils

Kelly S. Ramirez, Christopher G. Knight, Mattias de Hollander, Francis Q. Brearley, Bede Constantinides, Anne Cotton, Si Creer, Thomas W. Crowther, John Davison, Manuel Delgado‐Baquerizo, Ellen Dorrepaal, David R. Elliott, Graeme Fox, Robert I. Griffiths, Chris C. Hale, Kyle Hartman, Ashley Houlden, Davey L. Jones, Eveline J. Krab, Fernando T. Maestre, Krista L. McGuire, Sylvain Monteux, Caroline Orr, Wim H. van der Putten, Ian S. Roberts, David A. Robinson, Jennifer D. Rocca, Jennifer K. Rowntree, Klaus Schlaeppi, M. Shepherd, Brajesh K. Singh, Angela L. Straathof, Jennifer Bhatnagar, Cécile Thion, Marcel G. A. van der Heijden, Franciska T. de Vries

Nature Microbiology · 2017

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Summary

The emergence of high-throughput DNA sequencing methods provides unprecedented opportunities to further unravel bacterial biodiversity and its worldwide role from human health to ecosystem functioning. However, despite the abundance of sequencing studies, combining data from multiple individual studies to address macroecological questions of bacterial diversity remains methodically challenging and plagued with biases. Here, using a machine-learning approach that accounts for differences among studies and complex interactions among taxa, we merge 30 independent bacterial data sets comprising 1,998 soil samples from 21 countries. Whereas previous meta-analysis efforts have focused on bacterial diversity measures or abundances of major taxa, we show that disparate amplicon sequence data can b

Source type
Peer-reviewed study
DOI
10.1038/s41564-017-0062-x
Catalogue ID
BFmoef2q79-h4tzs3
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