Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Enhanced detection of circulating tumor DNA by fragment size analysis

Florent Moulière, Dineika Chandrananda, Anna Piskorz, Elizabeth Moore, James Morris, Lise Barlebo Ahlborn, Richard Mair, Teodora Goranova, Francesco Marass, Katrin Heider, Jonathan C. M. Wan, Anna Supernat, Irena Hudecova, Ioannis Gounaris, Susana R�os, Mercedes Jimenez‐Liñan, Javier García-Corbacho, Keval Patel, Oľga Østrup, Suzanne Murphy, Matthew Eldridge, Davina Gale, Grant D. Stewart, Johanna Burge, Wendy N. Cooper, Michiel S. van der Heijden, Charles Massie, Colin Watts, Pippa Corrie, Simon Pacey, Kevin M. Brindle, Richard D. Baird, Morten Mau‐Sørensen, Christine Parkinson, Christopher G. Smith, James D. Brenton, Nitzan Rosenfeld

Science Translational Medicine · 2018

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Summary

This translational research demonstrates that circulating tumour DNA exhibits enriched representation in fragment sizes between 90–150 bp, a property exploitable for improved cancer detection. By applying in vitro and computational size-selection methods, the authors achieved >twofold median enrichment in ctDNA detection in >95% of cases and >fourfold enrichment in >10% of cases. Integration of fragment length analysis with copy number profiling substantially improved cancer classification performance (AUC >0.99 for advanced cancer; AUC >0.91 for specific cancer types), suggesting fragment size analysis could complement or substitute for deeper sequencing strategies in cell-free DNA analysis.

Regional applicability

The findings are applicable to UK cancer diagnostics and precision oncology development, particularly for non-invasive early detection strategies in the NHS. Implementation would require integration into existing ctDNA sequencing workflows and validation within UK patient populations across diverse cancer types.

Key measures

ctDNA fragment size distribution (bp); median enrichment fold-change in detection; area under curve (AUC) for cancer identification; frequency of clinically actionable mutations detected; sensitivity and specificity by cancer type

Outcomes reported

The study measured circulating tumour DNA (ctDNA) fragment size distributions across 344 plasma samples from 200 cancer patients and assessed detection sensitivity improvements through fragment size selection. Key outcomes included enrichment of ctDNA detection, identification of clinically actionable mutations, and improved cancer classification accuracy using fragment length analysis.

Theme
Measurement & metrics
Subject
Out of scope / non-food
Study type
Research
Study design
Observational cohort with tumour-guided deep sequencing validation
Source type
Peer-reviewed study
Status
Published
Geography
International
System type
Laboratory / in vitro
DOI
10.1126/scitranslmed.aat4921
Catalogue ID
BFmoef2rp1-ssooz9

Topic tags

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