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Tier 3 — Observational / field trialPeer-reviewed

Multi-State Models for Panel Data: The<b>msm</b>Package for<i>R</i>

Jackson CH

Journal of Statistical Software · 2011

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Summary

Panel data are observations of a continuous-time process at arbitrary times, for example, visits to a hospital to diagnose disease status. Multi-state models for such data are generally based on the Markov assumption. This article reviews the range of Markov models and their extensions which can be fitted to panel-observed data, and their implementation in the <b>msm</b> package for R. Transition intensities may vary between individuals, or with piecewise-constant time-dependent covariates, giving an inhomogeneous Markov model. Hidden Markov models can be used for multi-state processes which are misclassified or observed only through a noisy marker. The package is intended to be straightforward to use, flexible and comprehensively documented. Worked examples are given of the use of <b>msm</b> to model chronic disease progression and screening. Assessment of model fit, and potential future developments of the software, are also discussed.

Outcomes reported

Referenced by PLOS supermarket placement trial as citation 43; likely supports topic area: methods / modelling / statistics. Topics: methods / modelling / statistics Evidence type: Modelling / projection Source report: PLOS supermarket placement trial Ref#: PLOS supermarket placement trial #43 Original: Jackson CH. Multi-state models for panel data: the msm package for R. J Stat Soft. 2011;38(8). https://doi.org/10.18637/jss.v038.i08

Theme
Farming systems, soils & land use
Subject
Dietary patterns & chronic disease
Study type
Research
Source type
Peer-reviewed research
Status
Published
Geography
United Kingdom
System type
Other
DOI
10.18637/jss.v038.i08
Catalogue ID
IRmoq83umn-dcf493
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