Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Agroforestry reshapes soil bacterial communities to enhance Ricinus communis oil quality and bioactivity over monocropping: comparative metagenomics and culture-dependent insights

Krishna Saharan; P. Pagaria; Taskeen Bano; Nishant Chauhan; Rabisankar Mandi; A. Mohd; Ravi Jameriya; Ramesh Kumar; Praduman Yadav; Pooja Yadav; Naincy Rathee; N. Chauhan; Ayan Sadhukhan

bioRxiv · 2026

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Summary

This field trial compared agroforestry and monocropping systems for castor (Ricinus communis) in Rajasthan, India, using metagenomic and culture-dependent approaches to characterise soil bacterial communities and their relationship to crop quality. Agroforestry enhanced oil bioactivity through increased phenolic content and altered fatty acid composition, correlating with enrichment of specific bacterial taxa (Rhizobium, Alkalimonas, Glutamicibacter and others) and enhanced expression of oil biosynthesis genes. Isolated plant growth-promoting bacteria from agroforestry soils exhibited biochemical traits linked to improved host oil quality, suggesting that farming system design modulates plant–soil–microbe interactions to enhance both crop bioactivity and soil health.

UK applicability

Whilst this study focuses on castor cultivation in Rajasthan's semi-arid climate, the mechanistic insights into how agroforestry reshapes soil microbiomes to enhance crop quality may inform UK agroforestry design and intercropping practices. However, direct application would require adaptation to temperate soil conditions, crop species, and native microbial communities.

Key measures

Seed morphology and germination; oil phenolic content (fold-change); ricinoleic, oleic and linoleic acid composition (gas chromatography and infrared spectroscopy); RcDGAT2 gene expression; antimicrobial activity (minimum inhibitory concentration or zone assays); bacterial community composition (16S rRNA full-length sequencing, Nanopore platform); alpha diversity indices; isolated bacterial strain characterisation (whole-genome sequencing, biochemical growth-promotion assays); Arabidopsis growth promotion

Outcomes reported

The study measured castor seed oil composition, antimicrobial properties, soil bacterial community structure via 16S rRNA sequencing, and plant growth-promoting traits of isolated bacterial isolates. Key findings included differences in phenolic content, fatty acid profiles, and taxonomic shifts in soil microbiomes between agroforestry and monocropping systems.

Theme
Farming systems, soils & land use
Subject
Agroforestry & intercropping
Study type
Research
Study design
Field trial with comparative metagenomics and culture-dependent microbiology
Source type
Peer-reviewed study
Status
Preprint
Geography
India
System type
Agroforestry
DOI
10.64898/2026.04.24.720747
Catalogue ID
NRmooal00w-001

Topic tags

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