Pulse Brain · Growing Health Evidence Index
Peer-reviewed

Cryptic variation fuels plant phenotypic change through hierarchical epistasis

Sophia G. Zebell, Carlos Martí‐Gómez, B. P. Fitzgerald, Camila Pinto da Cunha, Michael Lach, Brooke M. Seman, Anat Hendelman, Simon Sretenovic, Yiping Qi, Madelaine Bartlett, Yuval Eshed, David M. McCandlish, Zachary B. Lippman

Nature · 2025

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Summary

. Testing the ability of cryptic variation to fuel phenotypic diversification has been hindered by intractable genetics, limited allelic diversity and inadequate phenotypic resolution. Here, guided by natural and engineered cis-regulatory cryptic variants in a paralogous gene pair, we identified additional redundant trans regulators, establishing a regulatory network controlling tomato inflorescence architecture. By combining coding mutations with cis-regulatory alleles in populations segregating for all four network genes, we generated 216 genotypes spanning a wide spectrum of inflorescence complexity and quantified branching in over 35,000 inflorescences. Analysis of this high-resolution genotype-phenotype map using a hierarchical model of epistasis revealed a layer of dose-dependent int

Source type
Peer-reviewed study
DOI
10.1038/s41586-025-09243-0
Catalogue ID
SNmois7o6f-mxps6p
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