Pulse Brain · Growing Health Evidence Index
Peer-reviewed

Integrating genetic regulation and single-cell expression with GWAS prioritizes causal genes and cell types for glaucoma

Andrew R. Hamel, Wenjun Yan, John M. Rouhana, Aboozar Monovarfeshani, Xinyi Jiang, Puja A. Mehta, Jayshree Advani, Yuyang Luo, Qingnan Liang, Skanda Rajasundaram, Arushi Shrivastava, Katherine Duchinski, Sreekar Mantena, Jiali Wang, Tavé van Zyl, Louis R. Pasquale, Anand Swaroop, Puya Gharahkhani, Anthony P. Khawaja, Stuart MacGregor, Alex W. Hewitt, Alexander K. Schuster, Ananth C. Viswanathan, Andrew Lotery, Angela J. Cree, Calvin P. Pang, Caroline Brandl, Caroline C. W. Klaver, Caroline Hayward, Chiea Chuen Khor, Ching‐Yu Cheng, Christopher J. Hammond, Cornelia M. van Duijn, David A. Mackey, Einer Stefansson, Eranga N. Vithana, Francesca Pasutto, Fridbert Jonansson, Guðmar Þorleifsson, Jacyline Koh, James F. Wilson, Jamie E. Craig, Joëlle Vergroesen, John H. Fingert, Jost B. Jonas, Kāri Stefánsson, Kathryn P. Burdon, Li Jia Chen, Michael A. Kass, Nomdo M. Jansonius, Norbert Pfeiffer, Ozren Polašek, Paul J. Foster, Paul Mitchell, Pirro G. Hysi, Robert Wojciechowski, Sjoerd J. Driessen, Stuart W. Tompson, Terri L. Young, Tien Yin Wong, Tin Aung, Unnur Þorsteinsdóttir, Victor A. de Vries, Wishal D. Ramdas, Ya Xing Wang, Rui Chen, Véronique Vitart, Joshua R. Sanes, Janey L. Wiggs, Ayellet V. Segrè

Nature Communications · 2024

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Summary

Primary open-angle glaucoma (POAG), characterized by retinal ganglion cell death, is a leading cause of irreversible blindness worldwide. However, its molecular and cellular causes are not well understood. Elevated intraocular pressure (IOP) is a major risk factor, but many patients have normal IOP. Colocalization and Mendelian randomization analysis of >240 POAG and IOP genome-wide association study (GWAS) loci and overlapping expression and splicing quantitative trait loci (e/sQTLs) in 49 GTEx tissues and retina prioritizes causal genes for 60% of loci. These genes are enriched in pathways implicated in extracellular matrix organization, cell adhesion, and vascular development. Analysis of single-nucleus RNA-seq of glaucoma-relevant eye tissues reveals that the POAG and IOP colocalizing

Source type
Peer-reviewed study
DOI
10.1038/s41467-023-44380-y
Catalogue ID
SNmoj1y0b7-gir3jt
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