Pulse Brain · Growing Health Evidence Index
Peer-reviewed

MetaboAnalystR 4.0: a unified LC-MS workflow for global metabolomics

Zhiqiang Pang, Lei Xu, Charles Viau, Yao Lü, Reza Salavati, Niladri Basu, Jianguo Xia

Nature Communications · 2024

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Summary

The wide applications of liquid chromatography - mass spectrometry (LC-MS) in untargeted metabolomics demand an easy-to-use, comprehensive computational workflow to support efficient and reproducible data analysis. However, current tools were primarily developed to perform specific tasks in LC-MS based metabolomics data analysis. Here we introduce MetaboAnalystR 4.0 as a streamlined pipeline covering raw spectra processing, compound identification, statistical analysis, and functional interpretation. The key features of MetaboAnalystR 4.0 includes an auto-optimized feature detection and quantification algorithm for LC-MS1 spectra processing, efficient MS2 spectra deconvolution and compound identification for data-dependent or data-independent acquisition, and more accurate functional inter

Source type
Peer-reviewed study
DOI
10.1038/s41467-024-48009-6
Catalogue ID
SNmoj1y0w1-djdqc3
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