Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes

Liam McAllan, Damir Baranas̆ić, Sergio Villicaña, Scarlett Brown, Weihua Zhang, Benjamin Lehne, Marco Adamo, Andrew Jenkinson, Mohamed Elkalaawy, Borzoueh Mohammadi, Majid Hashemi, Nadia Fernandes, Nathalie Lambie, Richard T. Williams, Colette Christiansen, Youwen Yang, Liudmila Zudina, Vasiliki Lagou, Sili Tan, Juan Castillo‐Fernandez, James W. D. King, Richie Soong, Paul Elliott, James Scott, Inga Prokopenko, Inês Cebola, Marie Loh, Boris Lenhard, Rachel L. Batterham, Jordana T. Bell, John C. Chambers, Jaspal S. Kooner, William R. Scott

Nature Communications · 2023

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Summary

This integrative genomics study of 190 adipocyte samples reveals that DNA methylation variations are causally implicated in human obesity and its metabolic complications. By combining epigenome-wide association, transcriptomics, and Mendelian Randomisation with functional validation in adipocytes, the authors identify 864 obesity-associated methylation loci and connect them to altered expression of over 500 genes and specific regulatory mechanisms. The findings establish DNA methylation as a causal determinant of adipocyte dysfunction in obesity rather than merely a correlate.

UK applicability

These findings on epigenetic mechanisms of obesity may inform UK public health strategies and clinical intervention targeting, though the study is cell-culture and observational rather than a dietary intervention. The identification of methylation-driven adipocyte dysfunction could support precision medicine approaches in UK obesity management and metabolic disease prevention.

Key measures

DNA methylation patterns at 864 total loci (691 subcutaneous, 173 visceral); association P-values (P < 1 × 10-7); transcriptomic changes at >500 genes; causal effects inferred at 59 loci via Mendelian Randomisation; functional metabolic effects measured via CRISPR-activation and gene silencing

Outcomes reported

The study identified extensive DNA methylation changes associated with obesity across 691 loci in subcutaneous and 173 loci in visceral adipocytes, and connected these methylation variations to transcriptomic changes in over 500 target genes. Using Mendelian Randomisation and functional validation (CRISPR-activation and gene silencing), the researchers inferred causal effects of methylation on obesity and obesity-induced metabolic disturbances at 59 independent loci.

Theme
Nutrition & health
Subject
Dietary patterns & chronic disease
Study type
Research
Study design
Integrative genomics study combining epigenome-wide association, transcriptomic analysis, Mendelian Randomisation, and functional validation
Source type
Peer-reviewed study
Status
Published
Geography
International
System type
Human clinical
DOI
10.1038/s41467-023-38439-z
Catalogue ID
SNmoj7nw4v-tx0t6w

Topic tags

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