Pulse Brain · Growing Health Evidence Index
Tier 4 — Narrative / commentaryPeer-reviewed

Key Challenges in Plant Microbiome Research in the Next Decade

Ayomide Emmanuel Fadiji, A. A. Adeniji, Adedayo Ayodeji Lanrewaju, Afeez Adesina Adedayo, Chinenyenwa Fortune Chukwuneme, Blessing Chidinma Nwachukwu, Joshua Aderibigbe, Iyabo Olunike Omomowo

Microorganisms · 2025

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Summary

This review addresses critical barriers preventing the translation of plant microbiome research into field-scale agricultural impact. The authors synthesise technical obstacles—including sequencing limitations for low-abundance taxa, multi-omics data integration, and microbial spatiotemporal variability—alongside regulatory, ethical and scalability challenges in adopting synthetic biology and artificial intelligence tools. The paper proposes a research roadmap emphasising benchmarked, field-validated workflows, interdisciplinary collaboration, and equitable global access to advance resilient, climate-smart and resource-efficient farming systems.

Regional applicability

The review's frameworks and roadmap are applicable to United Kingdom agriculture, particularly for addressing soil health and sustainable intensification priorities. However, specific field validation and adaptation to UK soil types, climates and regulatory contexts (e.g. Environmental Land Management schemes) would be required to implement the proposed workflows in UK farming systems.

Key measures

Not applicable to a review paper; focuses on measurement challenges including sequencing coverage, multi-omics integration, spatiotemporal variability in microbial dynamics, and standardisation of controls and workflows

Outcomes reported

The review synthesises current barriers to plant microbiome research adoption and identifies promising experimental and computational strategies. It proposes a roadmap for translating microbiome science into field-validated, climate-smart agricultural applications across diverse soils, genotypes and climates.

Theme
Farming systems, soils & land use
Subject
Soil biology & microbiology
Study type
Narrative Review
Study design
Narrative review
Source type
Peer-reviewed study
Status
Published
Geography
Global
System type
Laboratory / in vitro
DOI
10.3390/microorganisms13112546
Catalogue ID
SNmomgwklx-4dtwvd

Topic tags

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