Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Gut microbiome heritability is nearly universal but environmentally contingent

Laura Grieneisen, Mauna Dasari, Trevor J. Gould, Johannes R. Björk, Jean‐Christophe Grenier, Vania Yotova, David Jansen, Neil Gottel, Jacob B. Gordon, Niki H. Learn, Laurence R. Gesquiere, Tim L. Wango, Raphael S. Mututua, J. Kinyua Warutere, Long’ida Siodi, Jack A. Gilbert, Luis B. Barreiro, Susan C. Alberts, Jenny Tung, Elizabeth A. Archie, Ran Blekhman

Science · 2021

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Summary

This longitudinal study of wild baboon populations provides robust evidence that host genetic effects on the gut microbiome are nearly universal, with 97% of microbiome phenotypes showing significant heritability despite typically low effect sizes (mean h² = 0.068). Heritability was environmentally contingent, increasing systematically during dry seasons, with low dietary diversity, and in older individuals. The findings highlight the importance of large-scale longitudinal sampling for accurate microbiome heritability quantification and suggest potential for selection on microbiome characteristics as a host phenotype.

Regional applicability

This study uses wild primate models rather than human subjects or agricultural systems directly relevant to United Kingdom farming or food production. However, the methodological insights on microbiome heritability quantification and the environmental contingency of genetic effects may inform UK-based human nutrition and microbiome research, particularly studies investigating gene–environment interactions in dietary interventions.

Key measures

Heritability estimates (h²) for microbiome phenotypes; proportion of heritable phenotypes (97%); mean heritability value (0.068); seasonal variation in heritability; diet diversity effects; age-related heritability patterns

Outcomes reported

The study quantified the heritability of gut microbiome phenotypes in 585 wild baboons tracked over 14 years, controlling for diet, age, and socioecological factors. It measured 16,234 microbiome profiles to determine what proportion of microbiome variation is attributable to host genetic versus environmental factors.

Theme
Nutrition & health
Subject
Gut microbiome & human health
Study type
Research
Study design
Observational cohort
Source type
Peer-reviewed study
Status
Published
Geography
Kenya
System type
Human clinical
DOI
10.1126/science.aba5483
Catalogue ID
SNmp6e7b2a-3160ao

Topic tags

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