Pulse Brain · Growing Health Evidence Index
Tier 4 — Narrative / commentaryPeer-reviewedConventional

Cis-regulatory dynamics in plant domestication

Xiang Li, Robert J. Schmitz

Trends in Genetics · 2025

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Summary

This 2025 narrative review in Trends in Genetics examines cis-regulatory dynamics as a molecular mechanism underlying phenotypic divergence in domesticated crops. Li and Schmitz synthesise evidence suggesting that mutations altering gene expression control—rather than protein sequences—frequently account for agronomic trait selection during domestication. The work positions transcriptional regulation as a primary driver of cultivar evolution from wild ancestors, with implications for understanding the genetic basis of crop improvement.

Regional applicability

The molecular mechanisms reviewed are universal across plant genomes and applicable to UK crop improvement programmes. However, the review's focus on fundamental genomic mechanisms rather than agronomic or nutritional outcomes limits direct applicability to UK farming practice or policy without further translation research on specific crops of commercial relevance.

Key measures

Comparative analysis of cis-regulatory variants and their effects on gene expression; phenotypic trait outcomes in domesticated versus wild crop ancestors; evidence synthesis on molecular mechanisms of domestication

Outcomes reported

This narrative review synthesises molecular evidence on how cis-regulatory mutations—alterations in DNA sequences controlling gene expression rather than protein-coding regions—have shaped phenotypic traits in domesticated crops during selective breeding. The paper examines the relative contribution of transcriptional regulation versus coding mutations to agronomic trait divergence.

Theme
General food systems / other
Subject
Measurement methods & nutrient profiling
Study type
Narrative Review
Study design
Narrative review
Source type
Peer-reviewed study
Status
Published
Geography
Global
System type
Laboratory / in vitro
DOI
10.1016/j.tig.2025.02.005
Catalogue ID
SNmoqqtc08-fv13hy

Topic tags

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