Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions

Jingjing Chang, Ohana Y. A. Costa, Yu Sun, Jilin Wang, Lei Tian, Shaohua Shi, Enze Wang, Li Ji, Changji Wang, Yingnan Pang, Zongmu Yao, Libo Ye, Jianfeng Zhang, Hongping Chen, Yaohui Cai, Dazhou Chen, Zhiping Song, Jun Rong, Jos M. Raaijmakers, Chunjie Tian, Eiko E. Kuramae

Nature Communications · 2025

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Summary

This 2025 study, published in Nature Communications, investigates how the domestication of rice has altered rhizosphere microbial communities with consequential effects on soil nitrogen cycling. The research suggests that domesticated rice varieties have reduced populations of nitrogen-fixing microorganisms whilst concurrently increasing nitrous oxide emissions—a potent greenhouse gas. The findings highlight unintended ecological trade-offs embedded in crop domestication and raise questions about the sustainability of current rice cultivation systems.

UK applicability

Rice is not a major UK crop; however, the mechanistic insights into how crop domestication reshapes soil microbiota and nitrogen cycling may inform breeding and agronomic strategies in cereals and other field crops grown in the UK, particularly regarding nitrogen use efficiency and greenhouse gas mitigation.

Key measures

Rhizosphere microbiome composition (likely 16S rRNA sequencing), nitrogen fixation rates, nitrous oxide (N₂O) emissions, microbial community structure and function

Outcomes reported

The study compared rhizosphere microbiome composition, nitrogen fixation capacity, and nitrous oxide emissions between domesticated rice and wild rice relatives. As suggested by the title, domestication appears to have reduced beneficial nitrogen-fixing microbial communities whilst increasing nitrous oxide emissions.

Theme
Farming systems, soils & land use
Subject
Soil biology & microbiology
Study type
Research
Study design
Field trial / comparative microbial analysis
Source type
Peer-reviewed study
Status
Published
Geography
China
System type
Arable cereals
DOI
10.1038/s41467-025-57213-x
Catalogue ID
SNmozbms1b-hkkjed

Topic tags

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