Pulse Brain · Growing Health Evidence Index
Tier 1 — Meta-analysis / systematic reviewPeer-reviewed

An approach to identify gene-environment interactions and reveal new biological insight in complex traits

Xiaofeng Zhu, Yihe Yang, Noah Lorincz‐Comi, Gen Li, Amy R. Bentley, Paul S. de Vries, Michael R. Brown, Alanna C. Morrison, Charles N. Rotimi, W. James Gauderman, D. C. Rao, Hugues Aschard, the CHARGE Gene-lifestyle Interactions Working Group

Nature Communications · 2024

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Summary

This meta-analysis presents a novel genome-wide approach to screen for gene-environment interactions in large, diverse cohorts, addressing the historical challenge of low statistical power in G×E research. The authors identified five genomic loci showing significant interactions with smoking or alcohol consumption for serum lipids, and provide empirical evidence that interaction and environmentally mediated effects are major contributors to variation in genetic architecture across populations. The findings suggest that accounting for G×E and mediation substantially improves understanding of complex trait heritability and phenotypic heterogeneity.

Regional applicability

This is an international genetic epidemiology study using cohorts from multiple populations. Results on gene-environment interactions for lipid metabolism are broadly applicable to United Kingdom populations, though the diverse ancestry composition of the CHARGE Consortium may enhance generalisability beyond European-ancestry populations typically represented in UK biobanks. UK researchers and clinicians may use these interaction findings to inform cardiovascular risk stratification models that account for both genetic and modifiable lifestyle factors.

Key measures

Genome-wide gene-environment interaction screening; serum lipid phenotypes (low-density lipoprotein cholesterol, triglycerides); cigarette smoking and alcohol consumption as environmental exposures; interaction and mediation heritability estimates

Outcomes reported

The study identified 5 loci (6 independent signals) that interact with cigarette smoking or alcohol consumption to influence serum lipid levels. The analysis demonstrated that interaction and environmentally mediated heritability contribute substantially to genetic effect size heterogeneity across populations.

Theme
Nutrition & health
Subject
Dietary fats & fatty acids
Study type
Meta-analysis
Study design
Meta-analysis
Source type
Peer-reviewed study
Status
Published
Geography
International
System type
Human clinical
DOI
10.1038/s41467-024-47806-3
Catalogue ID
SNmp6e7ae1-ij3x6g

Topic tags

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