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Vitagri Vitals · causal inference in agriculture

Investigate what shapes nutrient density

Vitagri Vitals connects farm records, food measurements and scientific evidence to investigate nutrient density and farming practices. Explore published studies, then follow our wheat example.

Grain zinc across five samples
Measured

Barn Door Farm · harvest 2025 · mg/kg dry matter

S237.6 S131.7 S329.2 S424.3 S521.2
r = 0.98 Zinc tracks fibre closely, but five samples from one season can't show a cause.
Causal inference in practice

Causal inference in farming and food

12 studies of farm productivity, food choices and nutrition. Choose a theme, then a region or country.

Positive findings from independent research, curated with the Vitals library. Results are specific to each study.

United Kingdom · 2018 · Food retailHealthier checkout choices17.3%fewer checkout snack purchasesRead case study
Change studiedMove checkout snacks
Estimated benefitHealthier purchases
Sector
Food retail
Objective
Estimate how removing sweets, chocolate and crisps from checkouts changes household purchases.
How it was estimated
Controlled interrupted time series: compare purchase trends at supermarkets with and without checkout policies.
Outcome
Purchases of the targeted foods fell an estimated 17.3% immediately; the 15.5% reduction at one year was less robust.
Lesson
Product placement can influence buying. Test longer-term effects before assuming a lasting change.
Limits
Purchases are not consumption; other retailer changes could affect the estimate.

Read the original study ↗ (opens in a new tab)Ejlerskov et al. · PLOS Medicine · 2018

Greece · 2022 · Cotton farmingBetter sowing advice, higher yields12–17%higher cotton yieldRead case study
Change studiedChoose sowing days
Estimated benefitHigher cotton yield
Sector
Cotton farming
Objective
Estimate the yield effect of sowing on recommended days rather than unfavourable days.
How it was estimated
A causal graph, matching and weighting compare 171 fields from a cooperative’s 2021 season.
Outcome
Estimated yield gains ranged from 12% to 17% across methods.
Lesson
Judge farm advice by its effect on production, alongside the accuracy of its forecasts.
Limits
One season; observational assumptions and unmeasured farm differences remain. Workshop paper.

Read the original study ↗ (opens in a new tab)Tsoumas et al. · NeurIPS workshop / arXiv · 2022

Ghana · 2026 · Maize farmingTarget fertiliser for better yields0.9–2.8t/ha median yield responseRead case study
Change studiedTarget fertiliser advice
Estimated benefitHigher maize yield
Sector
Maize farming
Objective
Estimate how fertiliser changes maize yield across local growing conditions.
How it was estimated
Causal forests use 2,854 yield observations from randomised trials; further modelling explores variation.
Outcome
Median yield responses were 2.8 t/ha in Sudan Savannah and 0.9 t/ha in Forest–Savannah Transition.
Lesson
Tailor fertiliser advice to local conditions. A national average can hide large differences.
Limits
Regional medians, not guaranteed field gains; explanatory soil and weather patterns are not separately randomised.

Read the original study ↗ (opens in a new tab)Kouame et al. · Field Crops Research · 2026

United Kingdom · 2022 · Food serviceClear labels, lower-carbon meals4.3%lower emissions per mealRead case study
Change studiedLabel meal carbon
Estimated benefitLower-carbon choices
Sector
Food service
Objective
Estimate how carbon labels change meal choices and emissions compared with no labels.
How it was estimated
A non-randomised field experiment compares labelled and unlabelled cafeterias, covering over 80,000 meal choices.
Outcome
Estimated emissions per meal fell 4.3%; high-carbon meal choices fell 2.7 percentage points.
Lesson
Clear information can change food choices at low cost. Measure the actual sales mix.
Limits
University cafeterias; results may differ in other settings. Emissions are calculated, not directly measured.

Read the original study ↗ (opens in a new tab)Lohmann et al. · Journal of Environmental Economics and Management · 2022

USA · 2016 · Precision maize farmingUse less nitrogen, earn more34%less sidedress nitrogenRead case study
Change studiedTailor nitrogen rates
Estimated benefitSave inputs, raise profit
Sector
Precision maize farming
Objective
Estimate how field-specific nitrogen advice changes fertiliser use, yield and profit.
How it was estimated
113 replicated strip trials in Iowa and New York compare model-recommended rates with grower-selected rates.
Outcome
Sidedress nitrogen fell 34% on average; estimated partial profit rose US$65/ha, with no significant yield difference.
Lesson
Testing advice in real fields can reveal savings that a yield forecast alone misses.
Limits
Volunteer farms, four seasons and historical prices. Environmental-loss reductions were simulated.

Read the original study ↗ (opens in a new tab)Sela et al. · Agronomy Journal · 2016

USA · 2022 · Beverage packagingClearer packs, lower-sugar choices14.2%less added sugar selectedRead case study
Change studiedClarify sugar labels
Estimated benefitLower-sugar choices
Sector
Beverage packaging
Objective
Estimate how sugar warnings and teaspoon disclosures change parents’ drink choices.
How it was estimated
A randomised online trial assigns 5,005 parents to seven packaging conditions.
Outcome
Warnings plus teaspoon disclosures reduced added sugar in selected drinks by 14.2% and calories by 6.5%.
Lesson
Test packaging with customers to find which information helps them choose.
Limits
A one-off simulated choice, not actual purchases or measured consumption.

Read the original study ↗ (opens in a new tab)Musicus et al. · JAMA Network Open · 2022

Italy · 2021 · Olive and olive-oil productionMore efficient organic olive farms~10%higher production efficiencyRead case study
Change studiedOrganic production
Estimated benefitGreater farm efficiency
Sector
Olive and olive-oil production
Objective
Estimate how organic certification changes farm production efficiency.
How it was estimated
A production model and propensity-score matching compare similar organic and conventional olive farms.
Outcome
Estimated technical efficiency was about 10% higher on organic farms, with the largest gains on small farms.
Lesson
Matching similar farms helps separate the effect of production practices from farm size.
Limits
Efficiency is not a 10% yield gain. Cross-sectional matching cannot remove unmeasured differences.

Read the original study ↗ (opens in a new tab)Raimondo et al. · Agriculture · 2021

Kenya · 2022 · Farm-linked food and nutritionConnect farm support with better nutrition+0.11child height-for-age score unitsRead case study
Change studiedLink farming and nutrition
Estimated benefitBetter growth and diets
Sector
Farm-linked food and nutrition
Objective
Estimate whether adding food, nutrition and hygiene support to an agricultural programme improves child growth.
How it was estimated
A cluster-randomised trial compares farming families receiving the combined package with agricultural support alone.
Outcome
Child height-for-age improved by 0.11 standard-score units over two years; dietary diversity and iron-rich food intake also improved.
Lesson
Link farm programmes to the foods people eat. More production alone may not improve nutrition.
Limits
A modest growth effect. The combined package cannot identify which individual component caused it.

Read the original study ↗ (opens in a new tab)Wegmüller et al. · American Journal of Clinical Nutrition · 2022

Australia · 2020 · Beef farmingSeaweed feed, lower methaneUp to 98%less methane per kg dry feedRead case study
Change studiedAdd Asparagopsis to cattle feed
Estimated benefitLower enteric methane
Sector
Beef farming
Objective
Estimate how adding Asparagopsis red seaweed to a feedlot diet changes methane emissions.
How it was estimated
Twenty Brangus steers in a randomised incomplete-block trial: four diets, five animals each. Respiration chambers measured methane fortnightly over 90 days; final doses were held for the last 60 days.
Outcome
At 0.20% of feed organic matter, methane yield (g/kg dry-matter intake) fell 98% against controls. At 0.10%, it fell 38%.
Lesson
A controlled feeding trial with direct emissions measurements can show whether a feed change works.
Limits
20 animals on a specific feedlot ration; doses were adjusted during the first 30 days. This is an enteric methane result, not a whole-farm footprint or a proven grazing-cattle effect. Weight-gain findings need confirmation.

Read the original study ↗ (opens in a new tab)MLA project report ↗ (opens in a new tab)Kinley et al. · Journal of Cleaner Production · 2020

New Zealand · 2023 · Dairy farmingFarmer groups spread better practice1.81×odds of nutrient-management adoptionRead case study
Change studiedSupport farmer groups
Estimated benefitBetter practice adoption
Sector
Dairy farming
Objective
Estimate how farmer-group participation changes adoption of sustainable management practices.
How it was estimated
Spatial propensity-score matching accounts for observed farm differences and neighbouring farmers’ choices.
Outcome
Estimated odds of adopting nutrient management were 1.81 times those of comparable non-participants.
Lesson
Peer learning can help practices spread. Account for local connections when assessing its effect.
Limits
Odds are not probabilities or yield gains; unmeasured farmer differences can still influence results.

Read the original study ↗ (opens in a new tab)Yang & Wang · Annals of Public and Cooperative Economics · 2023

Mexico · 2026 · Packaged food and drink manufacturingLess sugar, steady sales25%less added sugar sold per personRead case study
Change studiedIntroduce warning labels
Estimated benefitLess sugar, steady sales
Sector
Packaged food and drink manufacturing
Objective
Estimate how warning-label policy changes the nutrients sold in packaged foods and drinks.
How it was estimated
Interrupted time series compares monthly sales and product nutrition with projected pre-policy trends.
Outcome
Added sugar sold per person fell an estimated 25%, calories 15%, saturated fat 12% and sodium 7%; overall sales volume stayed stable.
Lesson
Track nutrition alongside sales volume to assess changes in the food supply. Reformulation may contribute to the gains.
Limits
No untreated comparison group; pandemic effects remain possible. Reformulation is inferred, not separately proven.

Read the original study ↗ (opens in a new tab)Garduño-Alanis et al. · Social Science & Medicine · 2026

India · 2024 · Smallholder crop farmingBetter seed access, better returns>20%higher paddy yieldRead case study
Change studiedImprove seed access
Estimated benefitHigher yield and income
Sector
Smallholder crop farming
Objective
Estimate how formal rather than informal seed sources affect yield and net crop income.
How it was estimated
Propensity-score matching compares similar smallholders in India’s National Sample Survey.
Outcome
Estimated yields rose over 20% for paddy and nearly 50% for arhar; paddy net income rose 23%.
Lesson
Seed access can improve returns, but benefits differ by crop. Include seed costs in the decision.
Limits
Survey-based estimates; matching cannot remove unmeasured differences or isolate every feature of formal seeds.

Read the original study ↗ (opens in a new tab)Nandi · Indian Journal of Agricultural Economics · 2024

01 · Observe / Barn Door Farm wheat case

Five samples.
A pattern worth investigating.

The grain samples differ in nutritional composition. Select a nutrient, reorder the samples or follow one sample across the charts.

Every chart and variable is labelled: Measured Recorded Partial Proposed Missing

Grain zinc across five samples

Measured

Zinc and fibre

Measured

Measured grain only · Pearson r = 0.978 · R² = 0.957 · n = 5.

Tap a point or choose a sample to follow it across the page.
Read measured values
Measured grain · five samples · harvest 2025
Sample Zinc (mg/kg DM) Iron (mg/kg DM) Protein (% DM) Manganese (mg/kg DM) Phosphorus (mg/kg DM) Fibre (% DM)
S1 31.690 35.666 13.158 20.698 2549.228 8.560
S2 37.569 42.420 11.844 18.615 2989.742 11.102
S3 29.188 31.726 12.647 25.727 2930.318 8.929
S4 24.266 28.043 10.755 19.001 2689.886 6.112
S5 21.198 28.186 12.227 14.675 2469.190 4.717

What this shows

Across five measured samples, higher fibre goes with higher zinc. That's a lead worth a closer look.

What it can't show

One season and one sample per field can't establish a treatment effect. S4 and S5 have provisional field links; their lab results don't change if those links change.

02 · Explore / Soil biology to food nutrition

Bring the soil-to-food
question to life.

Explore how soil indicators could be compared with grain nutrition. Change the soil indicator and test the two possible field assignments to see which patterns move.

Partial Soil values on this stepThe soil values below are illustrative values from the case study, not soil measurements from this farm. Their correlations cannot validate a soil-to-food relationship.

Partial

Partial

Select a point to see its illustrative soil value and measured grain result.

Read the plotted data and its status
Illustrative soil values · provisional report assignment · S4/S5 can be swapped
Indicator and timing Unit S1 S2 S3 S4 S5
Solvita CO₂ burst · before crop ppm CO₂-C 75.000 75.783 65.467 64.200 62.167
Active carbon (POXC) · after harvest mg/kg 498.817 545.933 438.600 466.883 417.950
Fungi:bacteria ratio · before crop ratio 0.710 0.832 0.713 0.502 0.588
Earthworm biomass · before crop g per spade 4.583 5.850 3.700 3.250 2.100
Microbial biomass carbon · before crop mg C/kg 408.700 363.117 468.817 339.767 338.867
Mycorrhizal colonisation · at flowering % root length 19.617 21.917 19.000 24.250 18.167

The next evidence to collect
Pair measured soil biology and grain samples at matched locations, record variety and yield, and confirm the field identities. The case proposes six sampling points per field.

03 · Investigate / The causal engine

Understand the causes
of the outcome.

Agriculture connects biological, physical, social and economic systems. Predictive models help anticipate outcomes. Causal reasoning adds the intervention question: what might change if we farm differently?

Vitagri’s causal engine brings scientific evidence, farm data and causal reasoning together. Its map makes possible pathways and competing explanations visible, helping assess whether the available evidence can support an estimate of an intervention’s effect.

The case asks whether foliar zinc could change grain zinc. Baseline soil may influence both treatment decisions and outcomes, so it needs measuring before any effect can be estimated.

Moving markers trace assumptions, not measured effects.
Existing wheat-graph relationshipProposed case-specific relationship
Read the selected relationships
  • Baseline soil → soil chemistry (case-proposed assumption)
  • Soil chemistry → grain composition (existing wheat-graph assumption)
  • Baseline soil → foliar zinc (case-proposed assumption)
  • Foliar zinc → grain composition (case-proposed assumption)
  • Grain composition → laboratory result (existing wheat-graph assumption)

A selected extract, not the complete causal model or adjustment set. Graph relationships are assumptions to examine. The full Vitals workspace remains private.

04 · Decide / From a question to the right next step

Choose the next step
the evidence needs.

A promising pattern doesn't always call for a field trial. Vitals weighs what the question asks, what the records and published evidence can already support, and what is practical on the farm. It then proposes the most proportionate next step, or says plainly that the evidence isn't there yet.

  1. Start from the published evidence

    When it fits: the question has already been studied under similar crops, soils and conditions.

    Frames what to expect before any new work is planned.

  2. Applies in this case

    Complete or correct the records

    When it fits: gaps or uncertain links in existing records weaken what they can show.

    Here: confirm the S4 and S5 field identities and fill the missing sowing date.

  3. Applies in this case

    Measure what's missing

    When it fits: a competing explanation can't be checked because nobody has measured it.

    Here: soil, yield and bran fraction, paired with grain samples (worked example below).

  4. Learn from changes already happening

    When it fits: a practice is changing anyway, or differs between fields or seasons, and good records can support a fair comparison.

    Often lower-burden than a trial, but it relies on stronger assumptions.

  5. Run a controlled trial

    When it fits: the question is about changing a specific practice, and the farm can set aside comparable strips or plots.

    The strongest test of a practice change, but it asks the most of the farm.

  6. Applies in this case

    Hold off on changing practice

    When it fits: the evidence can't yet support a change. Vitals names what would be needed instead of recommending one.

    Here: five samples from one season don't justify a practice change.

Whatever the step, the protocol, timing and any costs are agreed with you before anything starts. Many questions need only one or two of these steps; a trial is one option among several.

Proposed Worked example: an observational sampling study for this case

No treatment is assigned and nothing about the farming changes. Instead, soil, crop and grain are measured at six matched points in each of the five fields through one season, so the soil-to-grain question can be examined with real soil data, not illustrative values.

Today After the study
Grain samples Measured 5, one per field Measured 30, six per field
Soil biology & chemistry Partial Illustrative values only Measured At the same 30 spots
Soil ↔ grain link Uncertain Field level; S4/S5 provisional Measured Point by point, confirmed
Yield & bran fraction Missing Not recorded Measured From the same spots

What “paired” means: one sampling point, followed through the season

  1. Before the crop Soil core: chemistry, respiration, fungi:bacteria, earthworms, microbial biomass
  2. At flowering Roots: mycorrhizal colonisation
  3. At harvest Grain: composition, bran fraction and yield
  4. One data point Soil, roots and grain all from the same spot. Repeated 30 times, that's a real soil-to-grain comparison.

Field records (confirmed field identity, variety, sowing date, nitrogen and programme) are kept for every point, so other explanations can be checked too.

What it could show

Whether measured soil biology and grain minerals move together across 30 matched points, and whether yield or bran fraction explains part of the zinc–fibre pattern.

What it can't show

That a practice or soil property causes the difference. Other factors could still explain it, so any link it finds is a lead for further work, not a recommendation.

An illustrative study outline, not an agreed protocol. No results are shown.

One connected programme

Evidence today.
Better models through testing.

Our predictive-modelling research asks how farming conditions relate to food composition, whether food measurements can help test claims about how it was grown, and which interventions deserve field testing. These capabilities need independent validation across farms and seasons.

Pulse · scientific evidence

Frame the question and assess possible explanations.

Vitals · your farm and food data

Inspect patterns, trace pathways and prioritise measurements.

Predictive modelling · research

Test and refine forecasts and verification methods against independent field evidence.

Questions & evidence

Nutrient density and farm intelligence: questions

What is nutrient density?

Nutrient density describes the nutrients a food provides relative to its energy content. Compare food measurements on the same basis, such as per 100 g or per 100 kcal.

How can causal inference help investigate nutrient density?

Causal inference can estimate how a farming practice changes a measured nutrient when the study design and data support that comparison. Vitals helps identify the evidence and measurements needed to test it.

What is causal inference in agriculture?

Causal inference in agriculture investigates how an outcome would change under a different farming practice, rather than simply identifying which measurements move together. It can use controlled trials or suitable observational data, with explicit assumptions about confounding, timing and comparable groups.

How does Vitagri Vitals use causal inference?

Vitagri Vitals connects farm records, food measurements and research to investigate possible causes. Causal maps show assumptions and competing explanations, helping you choose what to measure or test next.

What is Vitagri Vitals?

Vitagri Vitals is a farm intelligence workspace for investigating nutrient density, farming practices and food quality. This page offers public examples; full access is arranged privately.

What does the Barn Door Farm wheat case show?

The case compares five measured grain samples from one farm in the 2025 harvest. Grain zinc and fibre have a descriptive Pearson correlation of 0.978. Five observations from one season cannot establish a treatment effect or show that the pattern generalises to other farms.

Are the soil biology values measured on the farm?

No. The six soil indicators shown here are illustrative values paired with measured grain nutrition. They are not farm soil measurements and cannot validate a soil-to-food relationship. S4 and S5 have provisional field assignments; switching them tests how sensitive the illustrated correlations are to those assignments.

How does causal reasoning differ from prediction?

Prediction asks what outcome is likely. Causal reasoning asks what might change after an intervention, such as a different nitrogen rate or foliar-zinc treatment. A directed acyclic graph (DAG) makes assumptions and competing explanations explicit. Estimating effects still requires suitable data, defensible assumptions and validation.

Can I explore the full Vitals workspace?

Full Vitals access is arranged privately. Request a demonstration to discuss your farm, laboratory or supply-chain question. The public charts and causal-map extract do not provide access to the full workspace.

Published by Vitagri · Updated . Source: selected Barn Door Farm wheat case, harvest 2025; case snapshot reviewed 23 September 2026. Pearson correlations use five paired values without adjustment for confounding. The full case report is private. For wider context, explore soil and nutrient-density research and the Growing Health report.

What question could
your data answer?

Discuss your farm, laboratory or supply-chain data with Vitagri. Explore the evidence you have and a practical route to stronger answers.

Tell us the question you would like to investigate. Full Vitals workspace access is arranged privately.

Source: selected Barn Door Farm wheat case, harvest 2025. Case snapshot reviewed 23 September 2026. Measured grain and illustrative soil values are distinguished throughout.