Pulse Brain · Growing Health Evidence Index
Tier 3 — Observational / field trialPeer-reviewed

Species Distribution Modelling: Contrasting presence-only models with plot abundance data

Vitor H. F. Gomes, Stéphanie D. IJff, Niels Raes, Iêda Leão do Amaral, Rafael P. Salomão, Luiz de Souza Coêlho, Francisca Dionízia de Almeida Matos, Carolina Volkmer de Castilho, Diógenes de Andrade Lima Filho, Dairon Cárdenas López, Juan Ernesto Guevara, William Ernest Magnusson, Oliver Lawrence Phillips, Florian Wittmann, Marcelo de Jesus Veiga Carim, Maria Pires Martins, Mariana Victória Irume, Daniel Sabatier, Jean‐François Molino, Olaf Bánki, José Renan da Silva Guimarães, Nigel C. A. Pitman, María Teresa Fernández Piedade, Abel Monteagudo Mendoza, Bruno Garcia Luize, Eduardo Martins Venticinque, Evlyn Márcia Moraes de Leão Novo, Percy Núñez Vargas, Thiago Sanna Freire Silva, Ângelo Gilberto Manzatto, John Terborgh, Neidiane Farias Costa Reis, Juan Carlos Montero, Katia Regina Casula, Beatriz Schwantes Marimon, Ben Hur Marimon-Junior, Eurídice N. Honorio Coronado, Ted R. Feldpausch, Alvaro Duque, Charles E. Zartman, Nicolás Castaño Arboleda, Timothy J. Killeen, Bonifacio Mostacedo, Rodolfo Vásquez, Jochen Schöngart, Rafael L. Assis, Marcelo Brilhante de Medeiros, Marcelo Fragomeni Simon, Ana Andrade, William Frederick Laurance, José Luís Camargo, Layon Oreste Demarchi, Susan G. W. Laurance, Emanuelle de Sousa Farias, Henrique Eduardo Mendonça Nascimento, Juan David Cardenas Revilla, Adriano Costa Quaresma, Flávia R. C. Costa, Ima Célia Guimarães Vieira, Bruno Barçante Ladvocat Cintra, Hernán Castellanos, Roel Brienen, Pablo R. Stevenson, Yuri Oliveira Feitosa, Joost F. Duivenvoorden, Gerardo A. Aymard C., Hugo F. Mogollón, Natália Targhetta, James A. Comiskey, Alberto Vicentini, Aline Lopes, Gabriel Damasco, Nállarett Dávila, Roosevelt García‐Villacorta, Carolina Levis, Juliana Schietti, Priscila Souza, Thaíse Emilio, Alfonso Alonso, David Neill, Francisco Dallmeier, Leandro Valle Ferreira, Alejandro Araujo‐Murakami, Daniel Praia, Dário Dantas do Amaral, Fernanda Antunes Carvalho, Fernanda Coelho de Souza, Kenneth J. Feeley, Luzmila Arroyo, Marcelo Petratti Pansonato, Rogério Gribel, Boris Villa, Juan Carlos Licona, Paul V. A. Fine, Carlos Cerón, Christopher Baraloto, Eliana M. Jimenez, Juliana Stropp, Julien Engel, Marcos Silveira

Scientific Reports · 2018

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Summary

This study validates species distribution modelling approaches by comparing MaxEnt predictions against spatial abundance models derived from a large Amazonian forest plot dataset. The authors found weak but significant positive relationships between natural history collection distributions and both abundance and distribution models, and propose a data quality pipeline that conservatively estimates species area of occupancy whilst removing spatial biases in museum specimen occurrence records. The findings suggest that presence-only SDMs should be applied cautiously in large biodiversity assessments without manual verification, particularly where automatic processing is used.

Regional applicability

This study focuses on Amazonian tropical forest species and methodologies for validating species occurrence data. Whilst the specific taxonomic and ecological context is tropical, the methodological framework for reconciling museum specimen bias with field plot data could inform UK biodiversity assessment practices, particularly for national conservation and IUCN assessments where distribution model accuracy is critical.

Key measures

Spatial correlation between natural history collection distributions and inverse distance weighting abundance models; sensitivity; area of occupancy estimates; data consistency metrics

Outcomes reported

The study compared presence-only species distribution models (MaxEnt) with spatial abundance models based on plot data for Amazonian tree species, and proposed a pipeline to improve occurrence data quality and estimate area of occupancy.

Theme
Measurement & metrics
Subject
Other / interdisciplinary
Study type
Research
Study design
Comparative observational study with methodological validation
Source type
Peer-reviewed study
Status
Published
Geography
Brazil
System type
Other
DOI
10.1038/s41598-017-18927-1
Catalogue ID
BFmucmwxjd-hswtkc

Topic tags

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